Welcome to PyGNA!

PyGNA is a Python Geneset Network Analysis package: it performs various statistical analyses on biological networks and genesets.

• Quickstart
  • Installation
  • Getting started
• Tutorial
  • General Usage
  • Complete analysis of one geneset
  • Analysis of a geneset from a table (e.g. DeSeq2)
  • Pipelines
  • Showing the results
  • Adding GNT or GNA test statistics
  • Diagnostic
• Command Line Tool
  • Network Info
  • Large Matrices creation
  • Converting tables and names
  • Geneset Network Topology Analysis
  • Geneset Network Association Analysis
  • Weights Diffusion Analysis
  • Hypothesis testing
  • Visualisation
• Benchmarking
  • Stochastic Block Model
  • High Degree Nodes simulations
• API
  • Block Model
  • Converters
  • Degree Model
  • Diagnostic
  • Elaborators
  • Output
  • Plots
  • Reading Data
  • Statistical Comparison
  • Statistical Diffusion
  • Statistical Test
• Changelog
  • Latest Version
  • Older Version

Indices and tables

• Index
• Module Index
• Search Page